# Acore Documentation

```{include} ./sections_readme/home_page.md
:caption: VueGen
:relative-docs: docs
:relative-images:
:start-line: 0
:end-line: 40
```

```{toctree}
:maxdepth: 1
:caption: Overview
```

```{toctree}
:maxdepth: 1
:caption: API usage examples
:hidden:

api_examples/filter_metabolomics
api_examples/normalization_analysis
api_examples/batch_correction
api_examples/imputation
api_examples/imputation_metabolomics
api_examples/exploratory_analysis
api_examples/drift_correction
api_examples/diff_regulation_anova_ttest_two_groups
api_examples/diff_regulation_anova_more_than_two_groups
api_examples/diff_regulation_ancova
api_examples/enrichment_analysis
```

```{toctree}
:maxdepth: 1
:caption: Reanalysis
:hidden:

PXD040621 <downloaded/PXD040621_analysis>
```

```{toctree}
:maxdepth: 1
:caption: Example dataset (preprocessing)
:hidden:

example_data/Download_PRIDE_data
example_data/ovarian_cancer
example_data/alzheimer_proteomics
example_data/MTBLS13411
```

```{toctree}
:maxdepth: 2
:caption: Modules
:hidden:

reference/acore
```

## Indices and tables

- [General Index](genindex)
- [Module Index](modindex)
- [Search Page](search)

```{toctree}
:maxdepth: 1
:caption: MISC:
:hidden:

llms
contributing
authors
history
README.md
```
